Ancient boy’s DNA pushes back date of earliest humans

A boy who lived in what’s now South Africa nearly 2,000 years ago has lent a helping genome to science. Using the long-gone youngster’s genetic instruction book, scientists have estimated that humans emerged as a distinct population earlier than typically thought, between 350,000 and 260,000 years ago.

The trick was retrieving a complete version of the ancient boy’s DNA from his skeleton to compare with DNA from people today and from Stone Age Neandertals and Denisovans. Previously documented migrations of West African farmers to East Africa around 2,000 years ago, and then to southern Africa around 1,500 years ago, reshaped Africans’ genetics — and obscured ancient ancestry patterns — more than has been known, the researchers report online September 28 in Science.
The ancient boy’s DNA was not affected by those migrations. As a result, it provides the best benchmark so far for gauging when Homo sapiens originated in Africa, evolutionary geneticist Carina Schlebusch of Uppsala University in Sweden and her colleagues conclude.

In line with the new genetically derived age estimate for human origins, another team has proposed that approximately 300,000-year-old fossils found in northwestern Africa belonged to H. sapiens (SN: 7/8/17, p. 6). Some researchers suspect a skull from South Africa’s Florisbad site, dated to around 260,000 years ago, qualifies as H. sapiens. But investigators often place our species’ origins close to 200,000 years ago (SN: 2/26/05, p. 141). There is broad consensus that several fossils from that time represent H. sapiens.

Debate over the timing of human origins will continue despite the new evidence from the child, whose remains came from previous shoreline excavations near the town of Ballito Bay, says Uppsala University evolutionary geneticist and study coauthor Mattias Jakobsson. “We don’t know if early Homo sapiens fossils or the Florisbad individual were genetically related to the Ballito Bay boy,” he says.

Thus, the precise timing of humankind’s emergence, and exact patterns of divergence among later human populations, remain unclear. Researchers have yet to retrieve DNA from fossils dating between 200,000 and 300,000 years old that either securely or possibly belong to H. sapiens.
However early human evolution played out, later mixing and mingling of populations had a big genetic impact. DNA evidence from more recent fossils, including those studied by Schlebusch’s group, increasingly suggests that Stone Age human groups migrated from one part of Africa to another and mated with each other along the way (SN: 10/20/12, p. 9), says Harvard Medical School evolutionary geneticist Pontus Skoglund. In the Sept. 21 Cell, he and his colleagues report that DNA from 16 Africans, whose remains date to between 8,100 and 400 years ago, reveals a shared ancestry among hunter-gatherers from East Africa to South Africa that existed before West African farmers first arrived 2,000 years ago.

That ancient set of common genes still comprises a big, varying chunk of the DNA of present-day Khoisan people in southern Africa, Skoglund’s group found. Earlier studies found that the Khoisan — consisting of related San hunter-gatherer and Khoikhoi herding groups — display more genetic diversity than any other human population.

Schlebusch’s team estimates that a genetic split between the Khoisan and other Africans occurred roughly 260,000 years ago, shortly after humankind’s origins and around the time of the Florisbad individual. Khoisan people then diverged into two genetically distinct populations around 200,000 years ago, the researchers calculate.

Ancient DNA in Schlebusch’s study came from seven individuals unearthed at six South African sites. Three hunter-gatherers, including the Ballito Bay boy, lived about 2,000 years ago. Four farmers lived between 500 and 300 years ago.

Comparisons to DNA from modern populations in Africa and elsewhere indicated that between 9 percent and 30 percent of Khoisan DNA today comes from an East African population that had already interbred with Eurasian people. Those East Africans were likely the much-traveled farmers who started out in West Africa and reached southern Africa around 1,500 years ago, the researchers propose.

Even a tiny oil spill spells bad news for birds

MINNEAPOLIS — Birds don’t need to be drenched in crude oil to be harmed by spills and leaks.

Ingesting even small amounts of oil can interfere with the animals’ normal behavior, researchers reported November 15 at the annual meeting of the Society of Environmental Toxicology and Chemistry North America. Birds can take in these smaller doses by preening slightly greasy feathers or eating contaminated food, for example.

Big oil spills, such as the 2010 Deepwater Horizon disaster, leave a trail of dead and visibly oily birds (SN: 4/18/15, p. 22). But incidents like last week’s 5,000-barrel spill from the Keystone pipeline — and smaller spills that don’t make national headlines — can also impact wildlife, even if they don’t spur dramatic photos.
To test how oil snacks might affect birds, researchers fed zebra finches small amounts of crude oil or peanut oil for two weeks, then analyzed the birds’ blood and behavior. Birds fed the crude oil were less active and spent less time preening their feathers than birds fed peanut oil, said study coauthor Christopher Goodchild, an ecotoxicologist at Oklahoma State University in Stillwater.

Oil-soaked birds will often preen excessively to try to remove the oil, sometimes at the expense of other important activities such as feeding. But in this case, the birds didn’t have any crude oil on their feathers, so the decrease in preening is probably a sign they’re not feeling well, the researchers say.

Exactly how the oil affects the birds’ activity levels isn’t clear. Researchers suspected that oil might deprive birds of oxygen by affecting hemoglobin, which carries oxygen in the blood. Blood tests didn’t turn up any evidence of damaged hemoglobin proteins but did find some evidence that oil-sipping birds might be anemic, Goodchild said. At the higher of two crude oil doses, birds’ blood contained less hemoglobin per red blood cell, a sign of anemia.
The findings, while preliminary, add to a growing pile of evidence that estimates of the number of animals impacted by oil spills might be too low. For instance, even a light sheen of oil on sandpipers’ wings makes it harder to fly, costing birds more energy, a different group of researchers reported earlier this year. That could affect everything from birds’ daily movements to long-distance migration.

‘Machines That Think’ predicts the future of artificial intelligence

Movies and other media are full of mixed messages about the risks and rewards of building machines with minds of their own. For every manipulative automaton like Ex Machina’s Ava (SN: 5/16/15, p. 26), there’s a helpful Star Wars droid. And while some tech titans such as Elon Musk warn of the threats artificial intelligence presents, others, including Mark Zuckerberg, dismiss the doomsayers.

AI researcher Toby Walsh’s Machines That Think is for anyone who has heard the hype and is seeking a critical assessment of what the technology can do — and what it might do in the future. Walsh’s conversational style is welcoming to nonexperts while his endnotes point readers to opportunities for deeper dives into specific aspects of AI.
Walsh begins with a history of AI, from Aristotle’s foundation of formal logic to modern facial-recognition systems. Excerpts from computer-composed poetry and tales of computers trouncing humans at strategy games (SN: 11/11/17, p. 13) are a testament to how far AI has come. But Walsh also highlights weaknesses, such as machine-learning algorithms’ reliance on so much data to master a single task.

This 30,000-foot view of AI research packs a lot of history, as well as philosophical and technical explanation. Walsh personalizes the account with stories of his own programming experiences, anecdotes about AI in daily life — like his daughter’s use of Siri — and his absolute, unapologetic love of puns.

Later in the book, Walsh speculates about technical hurdles that may curb further AI development and legal limits that society may want to impose. He also explores the societal impact that increasingly intelligent computers may have.
For instance, Walsh evaluates how likely various jobs are to be outsourced to AI. Some occupations, like journalist, will almost certainly be automated, he argues. Others, like oral surgeon, are probably safe. For future job security, Walsh recommends pursuing careers that require programming acumen, emotional intelligence or creativity.

AI also has the potential to revolutionize warfare. “Like Moore’s law, we are likely to see exponential growth in the capabilities of autonomous weapons,” Walsh writes. “I have named this ‘Schwarzenegger’s law’ to remind us of where it will end.” Walsh isn’t resigned to a Terminator-like future, though. If governments ban killer robots and arms developers use automation to enhance defensive equipment, he believes military AI could actually save many lives.

In fact, Walsh argues, all aspects of AI’s future impacts are in our hands. “Artificial intelligence can lead us down many different paths, some good and some bad,” he writes. “Society must choose which path to take.”