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Out-of-whack microbes in the vagina can raise HIV risk — and now there’s evidence that the makeup of the penis microbiome matters, too. The greater the number of anaerobic bacteria tucked under the foreskin, the more likely an uncircumcised man is to become infected with the virus, researchers report July 25 in mBio.

“This mirrors what’s been seen in women, but it’s the first study of its kind in men,” says Deborah Anderson, a microbiologist and gynecologist at Boston University School of Medicine.
The data come from heterosexual Ugandan men followed for two years as part of a larger study on circumcision. Researchers swabbed the men’s penises to collect bacteria samples at the beginning of the two-year study. Then they compared the penile bacterial composition of the 46 uncircumcised men who became infected with HIV over the course of the study with that of 136 uncircumcised men who didn’t.

The total amount of penile bacteria didn’t differ, but men with higher levels of anaerobic bacteria were more likely to have contracted HIV, researchers found. Having 10 times more Prevotella, Dialister, Finegoldia and Peptoniphilus bacteria raised the risk of contracting HIV by 54 to 63 percent after controlling for other factors that might affect risk, such as condom use habits and number of sexual partners.

The results might help explain why circumcision cuts the risk of HIV, says Thomas Hope, a cell biologist at Northwestern University Feinberg School of Medicine in Chicago: Removing the flap of foreskin takes away a moist hideout for bacteria that thrive in oxygen-starved environments. But, Hope cautions, the study only draws an association between the microbiome and HIV — not necessarily a cause and effect.

It’s not clear how certain bacteria might raise HIV risk, but the new study revealed one possible clue: Men with more anaerobic penis bacteria also had higher levels of inflammatory cytokine proteins, which call immune cells to the scene.

“Specific bacteria might cause inflammatory response that would cause the immune cells to congregate in the penis, where they’re more likely to be exposed to the virus,” says study coauthor Cindy Liu, a pathologist at George Washington University in Washington, D.C. HIV targets particular immune cells, so recruiting an immune response to the penis might have an unintended consequence — a free ferry ride for the virus into the bloodstream.
Liu and colleagues hope to test that explanation more thoroughly by looking at tissue samples from circumcised foreskins, and seeing whether there’s a relationship between the penis microbiome and the kinds of immune cells found in the foreskin.

Some of these same bacteria are also linked to increased HIV risk in women, and the microbes can be swapped between partners during sex. While practicing safe sex is still the best HIV-prevention strategy, topical creams that adjust the bacterial balance on the penis might someday help lower the risk of infection, Liu says.

For flowers, too much light at night could lead to a pollination hangover by day.

Far from any urban street, researchers erected street lights in remote Swiss meadows to mimic the effects of artificial light pollution. In fields lit during the night, flowers had 62 percent fewer nocturnal visitors than flowers in dark meadows, researchers report August 2 in Nature.

For one of the most common flowers, daytime pollination didn’t make up for nightly losses, says ecologist Eva Knop of the University of Bern in Switzerland. In a detailed accounting of the pollination life of cabbage thistles (Cirsium oleraceum), Knop and colleagues found that night-lit plants produced 13 percent fewer seeds overall than counterparts in naturally dark places.
Night lights could affect the entire network of plants and pollinators, the team suggests. In the test fields, nighttime pollination wasn’t just the business of a few kinds of specialized moth-loving plants. Flowers that fed a wide range of nighttime visitors also attracted a broad buzzing circus of different kinds of daytime pollinators. If the daytime insects don’t make up for nocturnal losses, a flower’s population might dwindle. And a lot of insects, both day and night, might then feel the loss of nectar and foliage, Knop says.

More than 80 percent of flower species get some help from animals in making seeds, and none evolved with light after sundown. “I hope people start to realize that it’s really something that changes the whole ecosystem,” Knop says.
The new study is the first to show how artificial light affects plants’ ability to make seeds, she says. The test is also unusual because it considers all kinds of insect pollinators instead of focusing on, say, only night-flying moths.
This big-picture view was so not easy to achieve. Finding possible dead-dark sites in highly developed Europe to set up LED lamps was impossible, so researchers worked in 14 dark-as-possible, remote meadows in land rising toward the Alps. But that created a problem. “If you don’t have light, you don’t have power,” Knop points out. To avoid generator growls and smells confounding their results, researchers painstakingly scouted sites where possible near water-powered energy sources and overall used “really long cables.”
For the sites with natural night, researchers measured pollination by patrolling set paths and catching any insect wriggling on a flower — in complete darkness, of course. The team used night-vision goggles but still didn’t have a perfect view, she says. It’s “not that easy to catch insects without three-dimensional vision.”

Besides paying special attention to the commonly visited cabbage thistle, researchers pieced together the whole network of which pollinator species visited which plant species day or night. Analysis of this Matterhorn of data suggested that changes in the night crew could affect daytime meadows.

The idea that night light could have broad knock-on effects on daytime pollinators is still speculation at this point, says ecologist Darren Evans of Newcastle University in England, who also studies light pollution and pollination. But the risk of such spillover warrants more attention.

A boy who lived in what’s now South Africa nearly 2,000 years ago has lent a helping genome to science. Using the long-gone youngster’s genetic instruction book, scientists have estimated that humans emerged as a distinct population earlier than typically thought, between 350,000 and 260,000 years ago.

The trick was retrieving a complete version of the ancient boy’s DNA from his skeleton to compare with DNA from people today and from Stone Age Neandertals and Denisovans. Previously documented migrations of West African farmers to East Africa around 2,000 years ago, and then to southern Africa around 1,500 years ago, reshaped Africans’ genetics — and obscured ancient ancestry patterns — more than has been known, the researchers report online September 28 in Science.
The ancient boy’s DNA was not affected by those migrations. As a result, it provides the best benchmark so far for gauging when Homo sapiens originated in Africa, evolutionary geneticist Carina Schlebusch of Uppsala University in Sweden and her colleagues conclude.

In line with the new genetically derived age estimate for human origins, another team has proposed that approximately 300,000-year-old fossils found in northwestern Africa belonged to H. sapiens (SN: 7/8/17, p. 6). Some researchers suspect a skull from South Africa’s Florisbad site, dated to around 260,000 years ago, qualifies as H. sapiens. But investigators often place our species’ origins close to 200,000 years ago (SN: 2/26/05, p. 141). There is broad consensus that several fossils from that time represent H. sapiens.

Debate over the timing of human origins will continue despite the new evidence from the child, whose remains came from previous shoreline excavations near the town of Ballito Bay, says Uppsala University evolutionary geneticist and study coauthor Mattias Jakobsson. “We don’t know if early Homo sapiens fossils or the Florisbad individual were genetically related to the Ballito Bay boy,” he says.

Thus, the precise timing of humankind’s emergence, and exact patterns of divergence among later human populations, remain unclear. Researchers have yet to retrieve DNA from fossils dating between 200,000 and 300,000 years old that either securely or possibly belong to H. sapiens.
However early human evolution played out, later mixing and mingling of populations had a big genetic impact. DNA evidence from more recent fossils, including those studied by Schlebusch’s group, increasingly suggests that Stone Age human groups migrated from one part of Africa to another and mated with each other along the way (SN: 10/20/12, p. 9), says Harvard Medical School evolutionary geneticist Pontus Skoglund. In the Sept. 21 Cell, he and his colleagues report that DNA from 16 Africans, whose remains date to between 8,100 and 400 years ago, reveals a shared ancestry among hunter-gatherers from East Africa to South Africa that existed before West African farmers first arrived 2,000 years ago.

That ancient set of common genes still comprises a big, varying chunk of the DNA of present-day Khoisan people in southern Africa, Skoglund’s group found. Earlier studies found that the Khoisan — consisting of related San hunter-gatherer and Khoikhoi herding groups — display more genetic diversity than any other human population.

Schlebusch’s team estimates that a genetic split between the Khoisan and other Africans occurred roughly 260,000 years ago, shortly after humankind’s origins and around the time of the Florisbad individual. Khoisan people then diverged into two genetically distinct populations around 200,000 years ago, the researchers calculate.

Ancient DNA in Schlebusch’s study came from seven individuals unearthed at six South African sites. Three hunter-gatherers, including the Ballito Bay boy, lived about 2,000 years ago. Four farmers lived between 500 and 300 years ago.

Comparisons to DNA from modern populations in Africa and elsewhere indicated that between 9 percent and 30 percent of Khoisan DNA today comes from an East African population that had already interbred with Eurasian people. Those East Africans were likely the much-traveled farmers who started out in West Africa and reached southern Africa around 1,500 years ago, the researchers propose.

Around the six-month mark, babies start to get really fun. They’re not walking or talking, but they are probably babbling, grabbing and gumming, and teaching us about their likes and dislikes. I remember this as the time when my girls’ personalities really started making themselves known, which, really, is one of the best parts of raising a kid. After months of staring at those beautiful, bald heads, you start to get a glimpse of what’s going on inside them.

When it comes to learning language, it turns out that a lot has already happened inside those baby domes by age 6 months. A new study finds that babies this age understand quite a bit about words — in particular, the relationships between nouns.
Work in toddlers, and even adults, reveals that people can struggle with word meanings under difficult circumstances. We might briefly falter with “shoe” when an image of a shoe is shown next to a boot, for instance, but not when the shoe appears next to a hat. But researchers wanted to know how early these sorts of word relationships form.

Psychologists Elika Bergelson of Duke University and Richard Aslin, formerly of the University of Rochester in New York and now at Haskins Laboratories in New Haven, Conn., put 51 6-month-olds to a similar test. Outfitted with eye-tracking gear, the babies sat on a parent’s lap and looked at a video screen that showed pairs of common objects. Sometimes the images were closely related: mouth and nose, for instance, or bottle and spoon. Other pairs were unrelated: blanket and dog, or juice and car.

When both objects were on the screen, the parents would say a sentence using one of the words: “Where is the nose?” for instance. If babies spent more time looking at the nose than the other object, researchers inferred that the babies had a good handle on that word.

When the babies were shown tricky pairs of closely related objects, like a cup of juice and a cup of milk, the babies spent nearly equal time looking at both pictures, no matter what word their parents said. But when the images were really distinct (juice and car, for instance) the babies spent more time looking at the spoken word.
These babies detected a difference between the “milk-juice” pair and the “juice-car” pair, recognizing that one pair is similar and the other isn’t, the researchers conclude November 20 in the Proceedings of the National Academy of Sciences.
To see whether this ability was tied to domestic life, the researchers sent the babies home with specialized gear: vests with audio recorders and adorable hats outfitted with small video cameras, one just above each ear. A camera on a tripod in a corner of the home also captured snippets of daily life. The resulting video and audio recordings revealed that babies whose caregivers used more nouns for objects in the room were better at the word task in the lab.

That means that babies learn words well when they can actually see the object being talked about. Hearing, “Open your mouth. Here comes the spoon!” as they watch the spoon come flying toward their face makes a bigger vocabulary impression than “Did you like riding in the car yesterday?”

A similar idea came from a recent study on preschoolers. These kids learned best when they saw one picture at a time (or when parents pointed at the relevant object). Babies — and older kids, too — like to see what you’re talking about.

The results are too early to provide advice to parents, says Bergelson, a cognitive and developmental psychologist. “But I think one thing suggested by our work is that parents should consider their young baby to be a real conversational partner,” she says. “Even young infants are listening and learning about words and the world around them before they start talking themselves, and their caregivers make that possible.”

There’s still lots to figure out about how babies soak up vocabulary. And as scientists come up with more ways to peer into the mysterious inner workings of a baby’s mind, those answers might lead to even more interesting conversations with our babies.

MINNEAPOLIS — Birds don’t need to be drenched in crude oil to be harmed by spills and leaks.

Ingesting even small amounts of oil can interfere with the animals’ normal behavior, researchers reported November 15 at the annual meeting of the Society of Environmental Toxicology and Chemistry North America. Birds can take in these smaller doses by preening slightly greasy feathers or eating contaminated food, for example.

Big oil spills, such as the 2010 Deepwater Horizon disaster, leave a trail of dead and visibly oily birds (SN: 4/18/15, p. 22). But incidents like last week’s 5,000-barrel spill from the Keystone pipeline — and smaller spills that don’t make national headlines — can also impact wildlife, even if they don’t spur dramatic photos.
To test how oil snacks might affect birds, researchers fed zebra finches small amounts of crude oil or peanut oil for two weeks, then analyzed the birds’ blood and behavior. Birds fed the crude oil were less active and spent less time preening their feathers than birds fed peanut oil, said study coauthor Christopher Goodchild, an ecotoxicologist at Oklahoma State University in Stillwater.

Oil-soaked birds will often preen excessively to try to remove the oil, sometimes at the expense of other important activities such as feeding. But in this case, the birds didn’t have any crude oil on their feathers, so the decrease in preening is probably a sign they’re not feeling well, the researchers say.

Exactly how the oil affects the birds’ activity levels isn’t clear. Researchers suspected that oil might deprive birds of oxygen by affecting hemoglobin, which carries oxygen in the blood. Blood tests didn’t turn up any evidence of damaged hemoglobin proteins but did find some evidence that oil-sipping birds might be anemic, Goodchild said. At the higher of two crude oil doses, birds’ blood contained less hemoglobin per red blood cell, a sign of anemia.
The findings, while preliminary, add to a growing pile of evidence that estimates of the number of animals impacted by oil spills might be too low. For instance, even a light sheen of oil on sandpipers’ wings makes it harder to fly, costing birds more energy, a different group of researchers reported earlier this year. That could affect everything from birds’ daily movements to long-distance migration.

Movies and other media are full of mixed messages about the risks and rewards of building machines with minds of their own. For every manipulative automaton like Ex Machina’s Ava (SN: 5/16/15, p. 26), there’s a helpful Star Wars droid. And while some tech titans such as Elon Musk warn of the threats artificial intelligence presents, others, including Mark Zuckerberg, dismiss the doomsayers.

AI researcher Toby Walsh’s Machines That Think is for anyone who has heard the hype and is seeking a critical assessment of what the technology can do — and what it might do in the future. Walsh’s conversational style is welcoming to nonexperts while his endnotes point readers to opportunities for deeper dives into specific aspects of AI.
Walsh begins with a history of AI, from Aristotle’s foundation of formal logic to modern facial-recognition systems. Excerpts from computer-composed poetry and tales of computers trouncing humans at strategy games (SN: 11/11/17, p. 13) are a testament to how far AI has come. But Walsh also highlights weaknesses, such as machine-learning algorithms’ reliance on so much data to master a single task.

This 30,000-foot view of AI research packs a lot of history, as well as philosophical and technical explanation. Walsh personalizes the account with stories of his own programming experiences, anecdotes about AI in daily life — like his daughter’s use of Siri — and his absolute, unapologetic love of puns.

Later in the book, Walsh speculates about technical hurdles that may curb further AI development and legal limits that society may want to impose. He also explores the societal impact that increasingly intelligent computers may have.
For instance, Walsh evaluates how likely various jobs are to be outsourced to AI. Some occupations, like journalist, will almost certainly be automated, he argues. Others, like oral surgeon, are probably safe. For future job security, Walsh recommends pursuing careers that require programming acumen, emotional intelligence or creativity.

AI also has the potential to revolutionize warfare. “Like Moore’s law, we are likely to see exponential growth in the capabilities of autonomous weapons,” Walsh writes. “I have named this ‘Schwarzenegger’s law’ to remind us of where it will end.” Walsh isn’t resigned to a Terminator-like future, though. If governments ban killer robots and arms developers use automation to enhance defensive equipment, he believes military AI could actually save many lives.

In fact, Walsh argues, all aspects of AI’s future impacts are in our hands. “Artificial intelligence can lead us down many different paths, some good and some bad,” he writes. “Society must choose which path to take.”

Termites are the new cockroach.

Literally. The Entomological Society of America is updating its master list of insect names to reflect decades of genetic and other evidence that termites belong in the cockroach order, called Blattodea.

As of February 15, “it’s official … that termites no longer have their own order,” says Mike Merchant of Texas A&M University in College Station, chair of the organization’s common names committee. Now all termites on the list are being recategorized.
The demotion brings to mind Pluto getting kicked off the roster of planets, says termite biologist Paul Eggleton of the Natural History Museum in London. He does not, however, expect a galactic outpouring of heartbreak and protest over the termite downgrade. Among specialists, discussions of termites as a form of roaches go back at least to 1934, when researchers reported that several groups of microbes that digest wood in termite guts live in some wood-eating cockroaches too.

Once biologists figured out how to use DNA to work out genealogical relationships, evidence began to grow that termites had evolved as a branch on the many-limbed family tree of cockroaches. In 2007, Eggleton and two museum colleagues used genetic evidence from an unusually broad sampling of species to publish a new tree of these insects (SN: 5/19/07, p. 318). Titled “Death of an order,” the study placed termites on the tree near a Cryptocercus cockroach.

Cryptocercus roaches live in almost termitelike style in the Appalachian Mountains, not too far from chemical ecologist and cockroach fan Coby Schal at North Carolina State University in Raleigh. Monogamous pairs of Cryptocercus roaches eat tunnels in wood and raise young there. The offspring feed on anal secretions from their parents, which provide both nutrition and starter doses of the wood-digesting gut microbes that will eventually let the youngsters eat their way into homes of their own.
Termites are “nothing but social cockroaches,” Schal says. Various roaches have some form of social life, but termites go to extremes. They’re eusocial, with just a few individuals in colonies doing all of the reproducing. In extreme examples, Macrotermes colonies can grow to 3 million individuals with only one queen and one king.

After several years of debate, the common names committee of the American entomologists’ organization voted it was time to switch to the new view of termites. At a February meeting of the society board, there was no objection. The common names of individual termite species, of course, will remain as something-something “termite.”

Considering whether to demote a whole order of insects is an uncommon problem, says Whitney Cranshaw of Colorado State University in Fort Collins, a longtime member of the society’s naming committee. “Probably some of us, including myself, didn’t want to make the change because we liked it the way it was,” he says. Termites and cockroaches as separate orders were easy to memorize for the undergraduates he teaches. Yet, he voted yes. “It’s what’s right.”

Two human mummies housed at the British Museum in London for more than a century boast the world’s oldest known — and longest hidden — tattoos of figures and designs, a new investigation finds. These people lived in Egypt at or shortly before the rise of the first pharaoh around 5,100 years ago.

Radiocarbon analyses of hairs from the mummies date the bodies to between 3351 B.C. and 3017 B.C., says a team led by Egyptologist Renée Friedman of the University of Oxford and bioarchaeologist Daniel Antoine of the British Museum in London. Infrared photography revealed that smudges on a male mummy’s upper right arm depict a wild bull and a Barbary sheep, while a female mummy bears four S-shaped patterns on her right shoulder and a line with bent ends on her right arm. These animals and figures appear in Egyptian art from the same period, the researchers report online March 1 in the Journal of Archaeological Science. Both sets of tattoos — which consist of a carbon-based pigment, possibly soot — may have symbolized power, social status or knowledge of cult activities, but their precise meanings are unclear.
The two were the only mummies found with tattoos, out of seven mummies originally buried at a southern Egyptian site and now held at the British Museum. All of the bodies had been preserved by the desert’s dry heat.

The tattooed Egyptian mummies are approximately as old as Ötzi the Iceman. The mummified man found in the Italian Alps has 61 dark lines tattooed on his limbs and torso, but no pictures or designs (SN: 1/23/16, p. 5). Some of the Iceman’s tattoos covered areas of joint disease and may have been intended as treatments. CT scans of the two Egyptian mummies found no signs of bone disease near or below tattoos.

A new analysis is shedding light on drought in Mongolia, both past and future.

By studying the rings of semifossilized trees, researchers constructed a climate history for the semiarid Asian nation spanning the last 2,060 years — going 1,000 years further back than previous studies.

It was suspected that a harsh drought from about 2000 to 2010 that killed tens of thousands of livestock was unprecedented in the region’s history and primarily the result of human-caused climate change. But the tree ring data show that the dry spell, while rare in its severity, was not outside the realm of natural climate variability, researchers report online March 14 in Science Advances.
“This is a part of the world where we don’t know about the past climate,” says Park Williams, a bioclimatologist at Columbia University’s Lamont-Doherty Earth Observatory in Palisades, N.Y., who was not involved with the study. “Having this record is a great resource for trying to understand past droughts in the region.”

In recent years, many studies have sought to unsnarl the role of anthropogenic climate change from natural variability on extreme weather events (SN: 1/20/18, p. 6). Such work is necessary for more accurately predicting future climate trends and helping governments prepare for the most severe scenarios, says study coauthor Amy Hessl, a physical geographer at West Virginia University in Morgantown. This is especially true in countries like Mongolia that lack certain infrastructure, such as enough water reservoirs, to ease the impact of events like prolonged drought.

Hessl and her colleagues studied tree rings in hundreds of samples of Siberian pines, well-preserved by Mongolia’s naturally dry climate. A ring’s width indicates how much the tree grew in a year. In wet years, the rings are wider; in dry years, skinnier.
The recent dry spell was the severest in recorded history. But the rings showed that an even more severe drought took place around the year 800, long before anthropogenic climate change began.

Still, computer simulations suggest that about a third of the recent drought’s severity could have been caused by elevated temperatures linked to climate change, the researchers found. The finding is consistent with studies on how climate change has affected other recent droughts in South Africa and California.

Using computer simulations, Hessl and her colleagues conclude that droughts in coming decades may not be any worse than those seen in Mongolia’s past. The team predicts that as global temperatures rise over the next century, Mongolia will first become drier, then wetter. Increased heat initially will dry out the plains. But at a certain point, hot air holds more moisture, leading to increased precipitation.

Those climate patterns will likely guide how Mongolia develops, Hessl says, because they have in the past. In 2014, she and colleagues published a paper detailing how a 15-year period of unprecedented temperate and rainy conditions in 13th century Mongolia may have led to the rise of Genghis Khan (SN Online: 3/10/14).

Making day-to-day activities more vigorous for a few minutes — such as briefly stepping up the pace of a walk — could offer people who don’t exercise some of the health benefits that exercisers enjoy.

That’s according to a new study of roughly 25,000 adults who reported no exercise in their free time. Those who incorporated three one- to two-minute bursts of intense activity per day saw a nearly a 40 percent drop in the risk of death from any cause compared with those whose days didn’t include such activity. The risk of death from cancer also fell by nearly 40 percent, and the risk of death from cardiovascular disease dropped almost 50 percent, researchers report online December 8 in Nature Medicine.

In a comparison with around 62,000 people who exercised regularly, including runners, gym-goers and recreational cyclists, the mortality risk reduction was similar.

“This study adds to other literature showing that even short amounts of activity are beneficial,” says Lisa Cadmus-Bertram, a physical activity epidemiologist at the University of Wisconsin–Madison, who was not involved in the research. “So many people are daunted by feeling that they don’t have the time, money, motivation, transportation, etc. to go to a gym regularly or work out for long periods of time,” she says. “The message we can take is that it is absolutely worth doing what you can.”

Emmanuel Stamatakis, an epidemiologist at the University of Sydney, and his colleagues analyzed a subset of records from the UK Biobank, a biomedical database containing health information on half a million people in the United Kingdom. The study’s non-exercising participants — more than half of whom were women and were 62 years old on average — had worn movement-tracking devices for a week.

Over an average seven years of follow-up, for those whose days included three to four bursts of activity, the mortality rate was 4.2 deaths from any cause per 1,000 people for one year. For those with no activity bursts, it was 10.4 deaths per 1,000 people for one year.

The researchers were looking for bursts of vigorous activity that met a definition determined in a laboratory study, including reaching at least 77 percent of maximum heart rate and at least 64 percent of maximum oxygen consumption. In real life, the signs that someone has reached the needed intensity level are “an increase in heart rate and feeling out of breath” in the first 15 to 30 seconds of an activity, Stamatakis says.

Regular daily activities offer several opportunities for these vigorous bursts, he says. “The simplest one is maximizing walking pace for a minute or two during any regular walk.” Other options, he says, include carrying grocery bags to the car or taking the stairs. “The largest population health gains will be realized by finding ways to get the least physically active people to move a little more.”